ExportClusteringDetailsOnly

Given a TrackSOM object export the clustering result as data.table.

Usage

ExportClusteringDetailsOnly(tracksom.result)

Arguments

tracksom.result

TrackSOM object as generated by TrackSOM

Value

Data.table containing the meta cluster, cluster, and tracking ids for all the cells

Examples

data_files <- sapply(c(0:4), function(i) {
system.file("extdata", paste0("synthetic_d", i, ".fcs"), package="TrackSOM")
})
use_cols <- c("x", "y", "z")
tracksom_result <- TrackSOM(inputFiles = data_files,
                            colsToUse = use_cols,
                            nClus = 10,
                            dataFileType = ".fcs"
)
#> Reading file /home/runner/work/_temp/Library/TrackSOM/extdata/synthetic_d0.fcs
#> Reading file /home/runner/work/_temp/Library/TrackSOM/extdata/synthetic_d1.fcs
#> Reading file /home/runner/work/_temp/Library/TrackSOM/extdata/synthetic_d2.fcs
#> Reading file /home/runner/work/_temp/Library/TrackSOM/extdata/synthetic_d3.fcs
#> Reading file /home/runner/work/_temp/Library/TrackSOM/extdata/synthetic_d4.fcs
#> Building SOM
#> Mapping data to SOM
#> Building MST
#> Extracting SOM nodes for each time point
#> Running meta clustering
#> Meta clustering time point 1 with 83 SOM nodes
#> Meta clustering time point 2 with 90 SOM nodes
#> Meta clustering time point 3 with 93 SOM nodes
#> Meta clustering time point 4 with 95 SOM nodes
#> Meta clustering time point 5 with 93 SOM nodes
tracksom_res <- ExportClusteringDetailsOnly(tracksom_result)